PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000820-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ZF-HD
Protein Properties Length: 300aa    MW: 32726.1 Da    PI: 8.4268
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000820-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.68.3e-3563120359
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     v YkeClkNhAas+Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++e
  NNU_000820-RA  63 VVSYKECLKNHAASIGGHALDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRREPDE 120
                    689*****************************99********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-2964118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-1864122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-3266117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.40166117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.6E-30195265IPR009057Homeodomain-like
SuperFamilySSF466892.59E-20197265IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-25204260IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDLATDTTPN STRKTQETDG ETPSPTQPAK LNEHHISKPL SFSNGVLKRH HHQNHTPTTP  60
AAVVSYKECL KNHAASIGGH ALDGCGEFMP SPSATPTDPT SLKCAACGCH RNFHRREPDE  120
GTHTVDYHHQ QLQHHPHQPI VARGRSPNSA SPPPLLSSYY PSAPHMLLAL STGLSGAPEN  180
HVSTTAAATT AATVTMTTTN PNGRKRFRTK FSQEQKEKMH AFSERLGWKM QKTDEEVVEE  240
FCNEIGVGKG VLKVWMHNNK HTFGKRDANG SRSSPDTNHN HSHHNDSSAH VTTNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-212052621875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257380.10.0PREDICTED: zinc-finger homeodomain protein 9
TrEMBLF6H5T29e-92F6H5T2_VITVI; Putative uncharacterized protein
STRINGVIT_14s0108g00750.t012e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-63homeobox protein 34